public static interface CollectMultipleMetrics.ProgramInterface
Modifier and Type | Method and Description |
---|---|
SinglePassSamProgram |
makeInstance(String outbase,
String outext,
File input,
File reference,
Set<MetricAccumulationLevel> metricAccumulationLevel,
File dbSnp,
File intervals) |
default SinglePassSamProgram |
makeInstance(String outbase,
String outext,
File input,
File reference,
Set<MetricAccumulationLevel> metricAccumulationLevel,
File dbSnp,
File intervals,
boolean includeUnpaired)
By default, this method calls the
makeInstance(String, String, File, File, Set, File, File) method without 'includeUnpaired' parameter. |
boolean |
needsReferenceSequence() |
boolean |
supportsMetricAccumulationLevel() |
default SinglePassSamProgram makeInstance(String outbase, String outext, File input, File reference, Set<MetricAccumulationLevel> metricAccumulationLevel, File dbSnp, File intervals, boolean includeUnpaired)
makeInstance(String, String, File, File, Set, File, File)
method without 'includeUnpaired' parameter.SinglePassSamProgram makeInstance(String outbase, String outext, File input, File reference, Set<MetricAccumulationLevel> metricAccumulationLevel, File dbSnp, File intervals)
boolean needsReferenceSequence()
boolean supportsMetricAccumulationLevel()